Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Gm38314-201ENSMUST00000195709 625 ntBASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Gm9299-201ENSMUST00000206392 1140 ntBASIC10.95□□□□□ -0.66
Trim40Q3UWA4 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Arhgef33-209ENSMUST00000225223 714 ntBASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Wdyhv1-206ENSMUST00000227142 786 ntBASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC10.95□□□□□ -0.66
Trim40Q3UWA4 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm35850-202ENSMUST00000211705 2120 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm15163-201ENSMUST00000120749 1302 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm16379-201ENSMUST00000161469 348 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm8762-201ENSMUST00000193486 339 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm7653-201ENSMUST00000214567 508 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm4935-201ENSMUST00000221316 1198 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gm37348-201ENSMUST00000193104 1789 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Ankrd52-201ENSMUST00000014642 6620 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Unkl-201ENSMUST00000015271 3414 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Ppargc1b-201ENSMUST00000063307 3330 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Trim40Q3UWA4 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Gm7553-201ENSMUST00000185805 1426 ntBASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Gm11591-201ENSMUST00000120063 702 ntBASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 n-R5s195-201ENSMUST00000082891 119 ntBASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Slc25a44-202ENSMUST00000168755 3418 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 AC123857.2-201ENSMUST00000225756 1582 ntBASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Trim40Q3UWA4 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms