Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm14058-201ENSMUST00000116082 735 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm25732-201ENSMUST00000175168 60 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm37466-201ENSMUST00000195692 652 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm38314-201ENSMUST00000195709 625 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm5714-201ENSMUST00000197343 566 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm42682-201ENSMUST00000198349 1265 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm7848-201ENSMUST00000210739 718 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm7940-201ENSMUST00000218195 769 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Upf3bQ3ULL6 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Upf3bQ3ULL6 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm7851-201ENSMUST00000117574 323 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm11783-201ENSMUST00000119549 885 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm13461-201ENSMUST00000120980 662 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm8199-201ENSMUST00000121323 823 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm6548-201ENSMUST00000167498 1165 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm5732-201ENSMUST00000182596 1007 ntBASIC12.5□□□□□ -0.41
Upf3bQ3ULL6 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms