Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm43807-201ENSMUST00000200678 1781 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 AC125486.1-201ENSMUST00000218701 320 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 AC121960.1-201ENSMUST00000227982 564 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gm42498-201ENSMUST00000199981 1372 ntBASIC13.76□□□□□ -0.21
Limch1Q3UH68 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gm12165-201ENSMUST00000117047 342 ntBASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.76□□□□□ -0.21
Limch1Q3UH68 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC13.76□□□□□ -0.21
Limch1Q3UH68 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gm28196-201ENSMUST00000187719 640 ntBASIC13.76□□□□□ -0.21
Limch1Q3UH68 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Limch1Q3UH68 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 AC167022.1-201ENSMUST00000218647 1458 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm11941-201ENSMUST00000119904 610 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm11960-201ENSMUST00000122068 925 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm17827-201ENSMUST00000211825 742 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm270-201ENSMUST00000223010 976 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm21811-201ENSMUST00000096485 930 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Limch1Q3UH68 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Limch1Q3UH68 Gm11660-201ENSMUST00000120955 412 ntBASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms