Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Lire1P11260 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.61
Lire1P11260 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.21□□□□□ -0.61
Lire1P11260 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Lire1P11260 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.21□□□□□ -0.61
Lire1P11260 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.21□□□□□ -0.61
Lire1P11260 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Lire1P11260 AC138604.1-201ENSMUST00000226969 739 ntBASIC11.21□□□□□ -0.61
Lire1P11260 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Lire1P11260 Mir339-201ENSMUST00000083659 96 ntBASIC11.21□□□□□ -0.61
Lire1P11260 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Lire1P11260 Gp1ba-202ENSMUST00000108551 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Lire1P11260 Ank2-214ENSMUST00000182547 2428 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Lire1P11260 AC126257.2-201ENSMUST00000215507 2300 ntBASIC11.21□□□□□ -0.62
Lire1P11260 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
Lire1P11260 Gm43937-201ENSMUST00000204640 3122 ntBASIC11.21□□□□□ -0.62
Lire1P11260 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Ccdc116-202ENSMUST00000115709 1900 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
Lire1P11260 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Lire1P11260 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Lire1P11260 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Sqor-202ENSMUST00000110506 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Gm11531-201ENSMUST00000117614 555 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm12058-201ENSMUST00000118614 437 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Lire1P11260 Gm13813-201ENSMUST00000120998 787 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm12291-201ENSMUST00000121627 311 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC11.2□□□□□ -0.62
Lire1P11260 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC11.2□□□□□ -0.62
Lire1P11260 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.2□□□□□ -0.62
Lire1P11260 Ap1g1-206ENSMUST00000179104 1096 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm3096-201ENSMUST00000185770 364 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm8885-201ENSMUST00000189382 598 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC11.2□□□□□ -0.62
Lire1P11260 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
Lire1P11260 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Lire1P11260 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Lire1P11260 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC11.2□□□□□ -0.62
Lire1P11260 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC11.2□□□□□ -0.62
Lire1P11260 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Lire1P11260 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Lire1P11260 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Gm8228-201ENSMUST00000189949 2192 ntBASIC11.19□□□□□ -0.62
Lire1P11260 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Gm14109-201ENSMUST00000118814 309 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Gm14277-201ENSMUST00000121195 360 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.19□□□□□ -0.62
Lire1P11260 Gm26361-201ENSMUST00000158868 186 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.19□□□□□ -0.62
Lire1P11260 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Lire1P11260 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.19□□□□□ -0.62
Lire1P11260 Gm23363-201ENSMUST00000175024 79 ntBASIC11.19□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms