Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm14819-201ENSMUST00000101645 928 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm10486-201ENSMUST00000101647 924 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm14632-201ENSMUST00000101654 864 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm12566-201ENSMUST00000121479 359 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 1700057H21Rik-201ENSMUST00000152467 383 ntTSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm4207-201ENSMUST00000173144 960 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm27039-201ENSMUST00000182438 962 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm27209-201ENSMUST00000183834 898 ntTSL 3 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Mir7677-201ENSMUST00000184226 67 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm20852-202ENSMUST00000188011 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm43491-201ENSMUST00000197133 784 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm45299-202ENSMUST00000211011 765 ntTSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 AC098716.1-201ENSMUST00000213527 703 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Olfr855-201ENSMUST00000061693 992 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Zfp982-201ENSMUST00000063704 1244 ntAPPRIS P1 TSL 3 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm10147-201ENSMUST00000075388 864 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Vpreb3-201ENSMUST00000000926 625 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Zfp850-201ENSMUST00000099111 941 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hoxd3P09027 AC154671.1-201ENSMUST00000228617 1578 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm9361-201ENSMUST00000198695 1507 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 AC160405.1-201ENSMUST00000218207 1545 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm37472-201ENSMUST00000192342 4052 ntBASIC9.36□□□□□ -0.91
Hoxd3P09027 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Gm10419-201ENSMUST00000100944 1671 ntTSL 2 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm5525-201ENSMUST00000190438 1312 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm28441-201ENSMUST00000190927 1343 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Olfr1288-202ENSMUST00000214816 1326 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Vmn1r-ps92-201ENSMUST00000120775 517 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC9.35□□□□□ -0.91
Hoxd3P09027 B9d1os-201ENSMUST00000137010 674 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 4930440I19Rik-202ENSMUST00000145972 676 ntTSL 2 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Hoxd3P09027 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Hoxd3P09027 Mir6979-201ENSMUST00000183927 56 ntBASIC9.35□□□□□ -0.91
Hoxd3P09027 Gm43184-201ENSMUST00000197247 542 ntBASIC9.35□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms