Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm25214-201ENSMUST00000104573 129 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm14644-201ENSMUST00000116671 647 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm11531-201ENSMUST00000117614 555 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm12957-201ENSMUST00000117835 377 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm8062-201ENSMUST00000139696 444 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm17420-201ENSMUST00000164753 153 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm43133-201ENSMUST00000197472 463 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm45880-201ENSMUST00000213041 853 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm19324-201ENSMUST00000213229 1169 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 AC133598.1-201ENSMUST00000224327 660 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Erich3-203ENSMUST00000189969 3460 ntBASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Pcdh1F7BJK1 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Pcdh1F7BJK1 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Pcdh1F7BJK1 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Pcdh1F7BJK1 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Pcdh1F7BJK1 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Pcdh1F7BJK1 Gm7841-201ENSMUST00000122108 1629 ntBASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm5850-201ENSMUST00000192923 1206 ntBASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm38002-201ENSMUST00000193255 180 ntBASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm35850-202ENSMUST00000211705 2120 ntBASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Pcdh1F7BJK1 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC10.52□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms