Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gm7851-201ENSMUST00000117574 323 ntBASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gm4909-201ENSMUST00000118749 794 ntBASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gm23085-201ENSMUST00000157849 293 ntBASIC14.12□□□□□ -0.15
Brf1Q8CFK2 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gm7848-201ENSMUST00000210739 718 ntBASIC14.12□□□□□ -0.15
Brf1Q8CFK2 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Lect2-202ENSMUST00000225183 823 ntBASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Brf1Q8CFK2 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm9129-201ENSMUST00000218173 1689 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm12579-201ENSMUST00000118040 783 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm38151-201ENSMUST00000195085 289 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Gm43984-201ENSMUST00000204572 2864 ntBASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Brf1Q8CFK2 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Erich3-203ENSMUST00000189969 3460 ntBASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gm24891-201ENSMUST00000104391 136 ntBASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gm9785-201ENSMUST00000062642 1006 ntBASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Brf1Q8CFK2 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC14.09□□□□□ -0.15
Brf1Q8CFK2 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Brf1Q8CFK2 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms