Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp47Q8BY87 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp47Q8BY87 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Usp47Q8BY87 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC16.46■□□□□ 0.22
Usp47Q8BY87 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Usp47Q8BY87 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Usp47Q8BY87 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC16.46■□□□□ 0.22
Usp47Q8BY87 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Usp47Q8BY87 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Usp47Q8BY87 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm43102-201ENSMUST00000201004 2324 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm14395-201ENSMUST00000120494 563 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm28388-201ENSMUST00000186262 437 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm44008-201ENSMUST00000204345 412 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm6653-201ENSMUST00000218063 1288 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 AC159103.1-201ENSMUST00000228325 429 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 Gm10254-201ENSMUST00000052888 867 ntBASIC16.45■□□□□ 0.22
Usp47Q8BY87 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC16.45■□□□□ 0.22
Usp47Q8BY87 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp47Q8BY87 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 CT010447.1-201ENSMUST00000225657 1608 ntBASIC16.44■□□□□ 0.22
Usp47Q8BY87 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Gm11892-201ENSMUST00000117711 1202 ntBASIC16.44■□□□□ 0.22
Usp47Q8BY87 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Gm18159-201ENSMUST00000174516 1070 ntBASIC16.44■□□□□ 0.22
Usp47Q8BY87 Gm42657-201ENSMUST00000201746 211 ntBASIC16.44■□□□□ 0.22
Usp47Q8BY87 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Gm44755-201ENSMUST00000207830 2102 ntBASIC16.44■□□□□ 0.22
Usp47Q8BY87 AC122891.1-201ENSMUST00000218671 268 ntBASIC16.44■□□□□ 0.22
Usp47Q8BY87 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp47Q8BY87 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm11451-201ENSMUST00000118946 630 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm3329-201ENSMUST00000159873 556 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm27438-201ENSMUST00000183480 110 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm29164-201ENSMUST00000185454 1024 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm9661-201ENSMUST00000221611 1122 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm4900-201ENSMUST00000222046 1628 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Gm9279-201ENSMUST00000223175 1606 ntBASIC16.43■□□□□ 0.22
Usp47Q8BY87 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Usp47Q8BY87 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Usp47Q8BY87 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms