Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gm18038-201ENSMUST00000197900 485 ntBASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gm19287-201ENSMUST00000203190 358 ntBASIC13.79□□□□□ -0.2
Limch1Q3UH68 Gm43962-201ENSMUST00000203898 190 ntBASIC13.79□□□□□ -0.2
Limch1Q3UH68 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.79□□□□□ -0.2
Limch1Q3UH68 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
Limch1Q3UH68 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm26286-201ENSMUST00000104166 134 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm13035-201ENSMUST00000117496 342 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm15004-201ENSMUST00000119192 630 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm15782-201ENSMUST00000121073 445 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm9034-201ENSMUST00000182071 1005 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 D9Wsu149-201ENSMUST00000214169 594 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Limch1Q3UH68 AC173482.6-201ENSMUST00000225889 1741 ntBASIC13.78□□□□□ -0.2
Limch1Q3UH68 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Limch1Q3UH68 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Limch1Q3UH68 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Limch1Q3UH68 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
Limch1Q3UH68 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC13.77□□□□□ -0.2
Limch1Q3UH68 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Limch1Q3UH68 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Limch1Q3UH68 Gm22133-201ENSMUST00000102082 109 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Gm14058-201ENSMUST00000116082 735 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Gm15131-201ENSMUST00000119124 595 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 Gm15432-201ENSMUST00000121106 195 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.77□□□□□ -0.21
Limch1Q3UH68 Gm38314-201ENSMUST00000195709 625 ntBASIC13.77□□□□□ -0.21
Limch1Q3UH68 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms