Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Gm807-202ENSMUST00000224929 408 ntBASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 CT025678.1-201ENSMUST00000214795 2972 ntBASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
H2afb2S4R1M3 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gm12380-201ENSMUST00000119012 544 ntBASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gm6548-201ENSMUST00000167498 1165 ntBASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gm7003-201ENSMUST00000195089 312 ntBASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
H2afb2S4R1M3 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
H2afb2S4R1M3 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm1840-201ENSMUST00000051687 1432 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm23596-201ENSMUST00000104304 132 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Mir877-201ENSMUST00000104738 85 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm12857-201ENSMUST00000117678 592 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm15207-201ENSMUST00000119259 442 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Gm3332-201ENSMUST00000189337 928 ntBASIC11.7□□□□□ -0.54
H2afb2S4R1M3 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
H2afb2S4R1M3 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms