Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm12712-201ENSMUST00000120676 801 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm22846-201ENSMUST00000157706 270 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm8756-201ENSMUST00000183250 929 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm43671-201ENSMUST00000200422 433 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 AC122024.3-201ENSMUST00000217719 294 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 AC130477.1-201ENSMUST00000226982 420 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Tas2r125-201ENSMUST00000076119 937 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.7□□□□□ -0.22
Scn11aQ9R053 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Rpl13-ps4-201ENSMUST00000194776 628 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm43163-201ENSMUST00000196571 442 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm43969-201ENSMUST00000204833 535 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm45135-201ENSMUST00000206787 1184 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm8420-201ENSMUST00000097103 598 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Gm43334-201ENSMUST00000197740 1318 ntBASIC13.69□□□□□ -0.22
Scn11aQ9R053 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Scn11aQ9R053 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Gm25562-201ENSMUST00000104608 133 ntBASIC13.68□□□□□ -0.22
Scn11aQ9R053 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Gm9133-201ENSMUST00000118289 540 ntBASIC13.68□□□□□ -0.22
Scn11aQ9R053 Gm15197-201ENSMUST00000120526 478 ntBASIC13.68□□□□□ -0.22
Scn11aQ9R053 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Gm9135-201ENSMUST00000182963 990 ntBASIC13.68□□□□□ -0.22
Scn11aQ9R053 Gm28833-201ENSMUST00000189671 559 ntBASIC13.68□□□□□ -0.22
Scn11aQ9R053 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Scn11aQ9R053 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms