Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm25076-201ENSMUST00000104098 132 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm12516-201ENSMUST00000120819 385 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm28937-201ENSMUST00000185413 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm29400-201ENSMUST00000187208 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm28662-201ENSMUST00000188446 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm28251-201ENSMUST00000188835 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm37318-201ENSMUST00000194325 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm38017-201ENSMUST00000194768 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm37287-201ENSMUST00000195449 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm37793-201ENSMUST00000195548 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm7150-201ENSMUST00000122032 981 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm9192-201ENSMUST00000183221 985 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm7940-201ENSMUST00000218195 769 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms