Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm25076-201ENSMUST00000104098 132 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm12516-201ENSMUST00000120819 385 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm28937-201ENSMUST00000185413 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm29400-201ENSMUST00000187208 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm28662-201ENSMUST00000188446 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm28251-201ENSMUST00000188835 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm37318-201ENSMUST00000194325 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm38017-201ENSMUST00000194768 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm37287-201ENSMUST00000195449 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm37793-201ENSMUST00000195548 695 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.72□□□□□ -0.37
Trim54Q9ERP3 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm7150-201ENSMUST00000122032 981 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm9192-201ENSMUST00000183221 985 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Gm7940-201ENSMUST00000218195 769 ntBASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trim54Q9ERP3 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms