Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Mir6420-201ENSMUST00000185032 102 ntBASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm28686-201ENSMUST00000187404 609 ntBASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Gm12857-201ENSMUST00000117678 592 ntBASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Gm43002-201ENSMUST00000200310 155 ntBASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Gm44487-201ENSMUST00000205145 325 ntBASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 AC107638.1-201ENSMUST00000213690 1061 ntBASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Atg10-201ENSMUST00000022119 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx56Q9D0R4 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 Gm7841-201ENSMUST00000122108 1629 ntBASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx56Q9D0R4 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Gm15207-201ENSMUST00000119259 442 ntBASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Gm45186-201ENSMUST00000206874 478 ntBASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx56Q9D0R4 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms