Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Erich3-203ENSMUST00000189969 3460 ntBASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm7841-201ENSMUST00000122108 1629 ntBASIC13.82□□□□□ -0.2
Trim56Q80VI1 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gm16166-201ENSMUST00000118291 787 ntBASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gm4726-201ENSMUST00000135604 736 ntBASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gm6019-201ENSMUST00000148369 736 ntBASIC13.81□□□□□ -0.2
Trim56Q80VI1 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC13.81□□□□□ -0.2
Trim56Q80VI1 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.81□□□□□ -0.2
Trim56Q80VI1 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim56Q80VI1 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm15352-201ENSMUST00000118696 270 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm11836-201ENSMUST00000121022 441 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Mir1943-201ENSMUST00000158276 73 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm37986-201ENSMUST00000193285 383 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm6108-201ENSMUST00000208365 367 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 AC154290.1-201ENSMUST00000223786 1240 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm14267-206ENSMUST00000226870 1209 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm4978-201ENSMUST00000071565 801 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms