Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm13117-201ENSMUST00000120894 691 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm10169-201ENSMUST00000121822 348 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm5805-201ENSMUST00000072779 456 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Gm18642-201ENSMUST00000206642 1400 ntBASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
Upf3aQ3ULJ3 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Upf3aQ3ULJ3 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm42816-201ENSMUST00000198433 325 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm3726-201ENSMUST00000203110 785 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm18561-201ENSMUST00000206027 804 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Gm17825-201ENSMUST00000206836 794 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 CT030653.1-201ENSMUST00000224382 1279 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 AC129308.3-201ENSMUST00000225652 524 ntBASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Upf3aQ3ULJ3 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 AC164702.1-201ENSMUST00000220135 2212 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm18059-201ENSMUST00000208073 580 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
Upf3aQ3ULJ3 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms