Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 AC154671.1-201ENSMUST00000228617 1578 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm24934-201ENSMUST00000103764 111 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm14726-201ENSMUST00000120623 896 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm13316-201ENSMUST00000140537 691 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm24990-201ENSMUST00000157406 323 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm25890-201ENSMUST00000177643 165 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm22614-201ENSMUST00000178300 165 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm22042-201ENSMUST00000082989 165 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm26110-201ENSMUST00000083971 165 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm8146-201ENSMUST00000192106 1847 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 AC122811.1-201ENSMUST00000222257 2921 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm43931-201ENSMUST00000204817 2870 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Gm18262-201ENSMUST00000222560 1946 ntBASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Col28a1Q2UY11 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Gm10434-201ENSMUST00000101158 471 ntBASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Gm12502-201ENSMUST00000120197 444 ntBASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Gm14247-201ENSMUST00000120950 237 ntBASIC11.4□□□□□ -0.58
Col28a1Q2UY11 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Gm30285-201ENSMUST00000214614 422 ntBASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 119.6 ms