Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Col8a1Q00780 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm22711-201ENSMUST00000116890 133 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm13351-201ENSMUST00000118087 414 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm24844-201ENSMUST00000158679 127 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm20414-201ENSMUST00000172918 646 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm7719-201ENSMUST00000182374 975 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm45527-201ENSMUST00000211052 774 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm45758-201ENSMUST00000212448 1006 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Col8a1Q00780 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Col8a1Q00780 CT030135.2-201ENSMUST00000225255 893 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm5513-201ENSMUST00000072982 1218 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm10152-201ENSMUST00000193475 1344 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm20633-201ENSMUST00000176742 2831 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm6211-201ENSMUST00000147973 4275 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm25766-201ENSMUST00000104101 131 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm11578-201ENSMUST00000118530 459 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm5638-201ENSMUST00000118618 1258 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm12856-201ENSMUST00000119471 1293 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm13117-201ENSMUST00000120894 691 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm26368-201ENSMUST00000157826 118 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm29763-201ENSMUST00000205306 616 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 AC153962.2-201ENSMUST00000219417 550 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm40879-201ENSMUST00000220759 612 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 AC124433.1-201ENSMUST00000224483 1063 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Arhgef33-210ENSMUST00000225548 456 ntBASIC10.05□□□□□ -0.8
Col8a1Q00780 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC10.05□□□□□ -0.8
Col8a1Q00780 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Col8a1Q00780 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Col8a1Q00780 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm5641-201ENSMUST00000091130 1488 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm38385-201ENSMUST00000194454 2351 ntBASIC10.04□□□□□ -0.8
Col8a1Q00780 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Col8a1Q00780 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Col8a1Q00780 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms