Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm43622-201ENSMUST00000200140 2019 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Erich3-203ENSMUST00000189969 3460 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm11930-201ENSMUST00000117788 190 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm31256-201ENSMUST00000194705 506 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm10254-201ENSMUST00000052888 867 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm5455-201ENSMUST00000058710 715 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 AC165351.1-201ENSMUST00000219078 2020 ntBASIC11.3□□□□□ -0.6
Tnfsf4P43488 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Tnfsf4P43488 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm6560-201ENSMUST00000198588 1591 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm7841-201ENSMUST00000122108 1629 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm12957-201ENSMUST00000117835 377 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm15004-201ENSMUST00000119192 630 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gzmn-202ENSMUST00000225535 989 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm21939-201ENSMUST00000221137 2773 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 AC173482.6-201ENSMUST00000225889 1741 ntBASIC11.29□□□□□ -0.6
Tnfsf4P43488 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Tnfsf4P43488 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Tnfsf4P43488 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Tnfsf4P43488 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Tnfsf4P43488 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Tnfsf4P43488 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Tnfsf4P43488 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms