Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC13.62□□□□□ -0.23
Traf1P39428 Gm44270-201ENSMUST00000203084 1234 ntBASIC13.62□□□□□ -0.23
Traf1P39428 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC13.62□□□□□ -0.23
Traf1P39428 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC13.62□□□□□ -0.23
Traf1P39428 AC115122.1-201ENSMUST00000224850 1040 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC13.62□□□□□ -0.23
Traf1P39428 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Traf1P39428 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Gm45532-201ENSMUST00000210342 3620 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Gm44152-201ENSMUST00000205007 1691 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Traf1P39428 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Gm8731-201ENSMUST00000118088 412 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC13.61□□□□□ -0.23
Traf1P39428 Gm43852-201ENSMUST00000202098 917 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Gm35960-201ENSMUST00000202712 767 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC13.61□□□□□ -0.23
Traf1P39428 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC13.61□□□□□ -0.23
Traf1P39428 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC13.61□□□□□ -0.23
Traf1P39428 AC166992.1-201ENSMUST00000216356 565 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Gm18636-201ENSMUST00000218846 1066 ntBASIC13.61□□□□□ -0.23
Traf1P39428 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Traf1P39428 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
Traf1P39428 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.61□□□□□ -0.23
Traf1P39428 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Traf1P39428 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Traf1P39428 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Traf1P39428 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Traf1P39428 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Gm37348-201ENSMUST00000193104 1789 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Traf1P39428 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Gm12579-201ENSMUST00000118040 783 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Gm15573-201ENSMUST00000119487 540 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Gm11956-201ENSMUST00000119525 512 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Gm14585-201ENSMUST00000120713 634 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Gm14665-201ENSMUST00000122294 557 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC13.6□□□□□ -0.23
Traf1P39428 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Traf1P39428 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC13.6□□□□□ -0.23
Traf1P39428 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC13.6□□□□□ -0.23
Traf1P39428 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Gm9826-201ENSMUST00000029124 1299 ntBASIC13.6□□□□□ -0.23
Traf1P39428 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Traf1P39428 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Traf1P39428 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Traf1P39428 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC13.59□□□□□ -0.23
Traf1P39428 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Traf1P39428 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms