Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm18164-201ENSMUST00000213769 927 ntBASIC15.17■□□□□ 0.02
Col18a1P39061 Gm18166-201ENSMUST00000215557 927 ntBASIC15.17■□□□□ 0.02
Col18a1P39061 Lcn3-201ENSMUST00000028304 684 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Rpl37-201ENSMUST00000045356 835 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Gm10020-201ENSMUST00000081993 612 ntBASIC15.17■□□□□ 0.02
Col18a1P39061 Gemin8-203ENSMUST00000096252 1039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 AC108858.2-201ENSMUST00000228186 1425 ntBASIC15.17■□□□□ 0.02
Col18a1P39061 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC15.16■□□□□ 0.02
Col18a1P39061 Mup-ps29-201ENSMUST00000122281 202 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 1700095J12Rik-201ENSMUST00000124620 737 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC15.16■□□□□ 0.02
Col18a1P39061 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Gm29593-201ENSMUST00000189827 620 ntTSL 5 BASIC15.16■□□□□ 0.02
Col18a1P39061 Hamp2-203ENSMUST00000217812 437 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Gm8170-201ENSMUST00000218581 945 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 1110034G24Rik-201ENSMUST00000061891 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 Gm7701-201ENSMUST00000163185 1479 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 Gm42815-201ENSMUST00000198787 1470 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Col18a1P39061 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col18a1P39061 Gm19692-201ENSMUST00000203856 2084 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC15.16■□□□□ 0.02
Col18a1P39061 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Col18a1P39061 Gm5739-201ENSMUST00000208601 1703 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col18a1P39061 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Col18a1P39061 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Gm17231-201ENSMUST00000163186 645 ntTSL 3 BASIC15.16■□□□□ 0.02
Col18a1P39061 1700012J22Rik-201ENSMUST00000193492 830 ntBASIC15.16■□□□□ 0.02
Col18a1P39061 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col18a1P39061 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col18a1P39061 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Gm44573-201ENSMUST00000191753 2370 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 Snord17-201ENSMUST00000104526 238 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC15.15■□□□□ 0.02
Col18a1P39061 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC15.15■□□□□ 0.02
Col18a1P39061 6030460B20Rik-201ENSMUST00000191764 1058 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Gm37597-201ENSMUST00000191853 382 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Gm44304-201ENSMUST00000200509 145 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col18a1P39061 AC154585.1-201ENSMUST00000218917 997 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Olfr642-201ENSMUST00000052660 945 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col18a1P39061 Gm25514-201ENSMUST00000083860 135 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col18a1P39061 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col18a1P39061 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.15■□□□□ 0.02
Col18a1P39061 Dync2li1-201ENSMUST00000025101 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm45428-201ENSMUST00000209619 1789 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Col18a1P39061 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm8876-201ENSMUST00000120768 1122 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Rian-208ENSMUST00000182370 352 ntTSL 3 BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm4960-201ENSMUST00000182928 1001 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Mir8111-201ENSMUST00000184463 137 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Gm42599-201ENSMUST00000201308 469 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC15.14■□□□□ 0.01
Col18a1P39061 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Gm44908-201ENSMUST00000208610 266 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 CU025215.1-201ENSMUST00000222986 603 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 AC134793.1-202ENSMUST00000227444 803 ntBASIC15.14■□□□□ 0.01
Col18a1P39061 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Galp-201ENSMUST00000037553 650 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms