Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC9.68□□□□□ -0.86
Hmgb3O54879 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC9.68□□□□□ -0.86
Hmgb3O54879 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC9.68□□□□□ -0.86
Hmgb3O54879 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Gm8228-201ENSMUST00000189949 2192 ntBASIC9.68□□□□□ -0.86
Hmgb3O54879 Nlrc5-207ENSMUST00000211816 7578 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Tiam1-201ENSMUST00000002588 7290 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Cacna1d-201ENSMUST00000112249 8068 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Aagab-201ENSMUST00000041551 5294 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 AC122197.2-201ENSMUST00000219196 1635 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Tmem170b-201ENSMUST00000129449 7168 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Ddx3x-201ENSMUST00000000804 4692 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Gm43447-201ENSMUST00000198471 1535 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Dgkd-201ENSMUST00000027517 5695 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Muc4-201ENSMUST00000096106 11277 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Gm24830-201ENSMUST00000102024 166 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Gm44958-201ENSMUST00000203734 736 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Gm26232-201ENSMUST00000083360 166 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Rnu1b6-201ENSMUST00000083839 166 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Shc1-210ENSMUST00000191485 3154 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Cacna1d-209ENSMUST00000224785 8041 ntAPPRIS ALT2 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Ctnnd1-218ENSMUST00000111692 6170 ntAPPRIS ALT1 TSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
Hmgb3O54879 Gm43773-201ENSMUST00000198548 2162 ntBASIC9.67□□□□□ -0.86
Hmgb3O54879 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Hmgb3O54879 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
Hmgb3O54879 AC124577.2-201ENSMUST00000217413 2420 ntBASIC9.66□□□□□ -0.86
Hmgb3O54879 Tacc2-217ENSMUST00000209108 3310 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Arhgef7-203ENSMUST00000098938 4628 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Tcf20-202ENSMUST00000109510 7347 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Sema4g-201ENSMUST00000026225 4548 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.86
Hmgb3O54879 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Hmgb3O54879 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC9.66□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms