Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm28302-201ENSMUST00000187931 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm28646-201ENSMUST00000188220 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm28205-201ENSMUST00000189177 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm29032-201ENSMUST00000189797 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm28695-201ENSMUST00000190300 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm37448-201ENSMUST00000192795 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm9136-201ENSMUST00000193368 454 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm43692-201ENSMUST00000198236 1062 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 AY036118-201ENSMUST00000200021 923 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Id2-201ENSMUST00000020974 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 0610040B10Rik-203ENSMUST00000198455 1643 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Gm44863-201ENSMUST00000207613 1422 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ap1g1-206ENSMUST00000179104 1096 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Gm8956-201ENSMUST00000203939 825 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Gm45433-201ENSMUST00000209386 247 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Gm18212-201ENSMUST00000211678 889 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Olfr1347-205ENSMUST00000220413 964 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Prl8a1-201ENSMUST00000006664 864 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Prpf40aQ9R1C7 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 AC171277.1-201ENSMUST00000216902 1441 ntBASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Prpf40aQ9R1C7 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 72.9 ms