Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm12389-201ENSMUST00000117696 418 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Mrip-ps-201ENSMUST00000184613 940 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm37284-201ENSMUST00000193607 539 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm45310-201ENSMUST00000210436 275 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 BC106175-202ENSMUST00000219344 1213 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 AC158392.3-201ENSMUST00000224271 1284 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 CT025618.1-203ENSMUST00000227008 589 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Hsd17b3-201ENSMUST00000039832 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm13700-201ENSMUST00000118624 1128 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm12274-201ENSMUST00000120062 385 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm16219-201ENSMUST00000120096 274 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm8451-201ENSMUST00000170338 447 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm11942-201ENSMUST00000180255 345 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm42655-201ENSMUST00000202782 1134 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm7536-201ENSMUST00000077389 444 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm5453-201ENSMUST00000080866 447 ntBASIC13.72□□□□□ -0.21
Scn11aQ9R053 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Scn11aQ9R053 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC13.71□□□□□ -0.21
Scn11aQ9R053 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC13.71□□□□□ -0.21
Scn11aQ9R053 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Scn11aQ9R053 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Gm14398-201ENSMUST00000117287 1073 ntBASIC13.71□□□□□ -0.22
Scn11aQ9R053 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Gm45481-201ENSMUST00000209717 877 ntBASIC13.71□□□□□ -0.22
Scn11aQ9R053 AC138716.2-201ENSMUST00000226670 1016 ntBASIC13.71□□□□□ -0.22
Scn11aQ9R053 AC154436.1-201ENSMUST00000227272 782 ntBASIC13.71□□□□□ -0.22
Scn11aQ9R053 AC122035.1-201ENSMUST00000227576 1016 ntBASIC13.71□□□□□ -0.22
Scn11aQ9R053 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Scn11aQ9R053 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Scn11aQ9R053 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms