Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Brf1Q8CFK2 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm25732-201ENSMUST00000175168 60 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm5733-201ENSMUST00000190232 939 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm5982-201ENSMUST00000196234 512 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm2965-201ENSMUST00000198365 343 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm45113-201ENSMUST00000207518 165 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm5369-201ENSMUST00000217499 588 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Gm10288-201ENSMUST00000084614 537 ntBASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Brf1Q8CFK2 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 AC160410.1-201ENSMUST00000219298 1972 ntBASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Gm1840-201ENSMUST00000051687 1432 ntBASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Gm11450-201ENSMUST00000121144 333 ntBASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Gm8199-201ENSMUST00000121323 823 ntBASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Gm5714-201ENSMUST00000197343 566 ntBASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 AC134869.4-202ENSMUST00000224350 837 ntBASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Brf1Q8CFK2 Gm13910-201ENSMUST00000121752 1428 ntBASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Gm14058-201ENSMUST00000116082 735 ntBASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Gm13035-201ENSMUST00000117496 342 ntBASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Gm13461-201ENSMUST00000120980 662 ntBASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Brf1Q8CFK2 Gm18734-201ENSMUST00000172937 808 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 110.9 ms