Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Usp47Q8BY87 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm12208-201ENSMUST00000122004 163 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm22138-201ENSMUST00000158748 128 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm44329-201ENSMUST00000197469 112 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 CT485607.1-201ENSMUST00000216100 85 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 AC115122.1-201ENSMUST00000224850 1040 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm6430-201ENSMUST00000054664 1248 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm37122-201ENSMUST00000195313 1567 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm44573-201ENSMUST00000191753 2370 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 AC165351.1-201ENSMUST00000219078 2020 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm4294-201ENSMUST00000105169 614 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm15615-201ENSMUST00000118876 198 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Gm43002-201ENSMUST00000200310 155 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 AC141438.2-201ENSMUST00000215068 271 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 AC135114.1-201ENSMUST00000228682 270 ntBASIC16.51■□□□□ 0.23
Usp47Q8BY87 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Usp47Q8BY87 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Usp47Q8BY87 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Arhgef3-204ENSMUST00000225949 3198 ntBASIC16.5■□□□□ 0.23
Usp47Q8BY87 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 AC165260.2-203ENSMUST00000224237 336 ntBASIC16.5■□□□□ 0.23
Usp47Q8BY87 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Usp47Q8BY87 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Gm17213-201ENSMUST00000165161 1360 ntBASIC16.49■□□□□ 0.23
Usp47Q8BY87 Paupar-201ENSMUST00000194826 3482 ntBASIC16.49■□□□□ 0.23
Usp47Q8BY87 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Usp47Q8BY87 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 83.4 ms