Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm27177-202ENSMUST00000183514 2703 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm13328-201ENSMUST00000120816 1020 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm11246-201ENSMUST00000120880 345 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm14460-201ENSMUST00000121511 639 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm7150-201ENSMUST00000122032 981 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm4654-201ENSMUST00000183305 982 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm44831-201ENSMUST00000208469 2989 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gm18983-201ENSMUST00000222884 2729 ntBASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Ubfd1Q78JW9 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm11949-201ENSMUST00000117640 372 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm15725-201ENSMUST00000119947 1090 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm11836-201ENSMUST00000121022 441 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm2517-201ENSMUST00000215651 348 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 CT485607.1-201ENSMUST00000216100 85 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Gm5879-201ENSMUST00000089501 1209 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ubfd1Q78JW9 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 CT009489.1-201ENSMUST00000227740 1893 ntBASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ubfd1Q78JW9 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 92.7 ms