Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 AC122197.2-201ENSMUST00000219196 1635 ntBASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Sh3rf1Q69ZI1 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm45251-201ENSMUST00000209486 1465 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm12106-201ENSMUST00000116006 1200 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm12566-201ENSMUST00000121479 359 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm8018-201ENSMUST00000173536 789 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gzmn-202ENSMUST00000225535 989 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm10312-201ENSMUST00000078515 489 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm2673-201ENSMUST00000120958 1608 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sh3rf1Q69ZI1 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm14999-201ENSMUST00000121039 624 ntBASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.94□□□□□ -0.5
Sh3rf1Q69ZI1 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms