Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Sox3P53784 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Sox3P53784 Gm12969-201ENSMUST00000120199 1004 ntBASIC11.31□□□□□ -0.6
Sox3P53784 Gm12196-201ENSMUST00000120954 262 ntBASIC11.31□□□□□ -0.6
Sox3P53784 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC11.31□□□□□ -0.6
Sox3P53784 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC11.31□□□□□ -0.6
Sox3P53784 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC11.31□□□□□ -0.6
Sox3P53784 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC11.31□□□□□ -0.6
Sox3P53784 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.31□□□□□ -0.6
Sox3P53784 Gm6905-201ENSMUST00000205729 511 ntBASIC11.31□□□□□ -0.6
Sox3P53784 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 AC126799.1-201ENSMUST00000221976 246 ntBASIC11.31□□□□□ -0.6
Sox3P53784 AC171241.1-201ENSMUST00000228144 1166 ntBASIC11.31□□□□□ -0.6
Sox3P53784 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.31□□□□□ -0.6
Sox3P53784 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC11.31□□□□□ -0.6
Sox3P53784 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Sox3P53784 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC11.31□□□□□ -0.6
Sox3P53784 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.31□□□□□ -0.6
Sox3P53784 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.3□□□□□ -0.6
Sox3P53784 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC11.3□□□□□ -0.6
Sox3P53784 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gm11451-201ENSMUST00000118946 630 ntBASIC11.3□□□□□ -0.6
Sox3P53784 Gm15573-201ENSMUST00000119487 540 ntBASIC11.3□□□□□ -0.6
Sox3P53784 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC11.3□□□□□ -0.6
Sox3P53784 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC11.3□□□□□ -0.6
Sox3P53784 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC11.3□□□□□ -0.6
Sox3P53784 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.3□□□□□ -0.6
Sox3P53784 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gm42518-201ENSMUST00000196277 938 ntBASIC11.3□□□□□ -0.6
Sox3P53784 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC11.3□□□□□ -0.6
Sox3P53784 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Sox3P53784 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.3□□□□□ -0.6
Sox3P53784 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.3□□□□□ -0.6
Sox3P53784 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms