Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC15.2■□□□□ 0.02
Col18a1P39061 Gm20091-201ENSMUST00000179683 189 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 Gm6677-201ENSMUST00000195100 441 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 Gm42867-201ENSMUST00000202995 469 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 Gm33080-201ENSMUST00000205429 172 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 4933407I05Rik-202ENSMUST00000213467 420 ntTSL 2 BASIC15.2■□□□□ 0.02
Col18a1P39061 AC133496.1-201ENSMUST00000223891 743 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Col18a1P39061 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC15.2■□□□□ 0.02
Col18a1P39061 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC15.2■□□□□ 0.02
Col18a1P39061 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Gm33366-201ENSMUST00000195583 3827 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col18a1P39061 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC15.19■□□□□ 0.02
Col18a1P39061 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Rpl7a-ps11-201ENSMUST00000118791 801 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 Mir1893-201ENSMUST00000122565 83 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 Gm13031-201ENSMUST00000140501 924 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Gm8268-201ENSMUST00000209683 458 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 AC154347.2-201ENSMUST00000221223 715 ntTSL 3 BASIC15.19■□□□□ 0.02
Col18a1P39061 AC153153.1-201ENSMUST00000225803 793 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 Gm16477-201ENSMUST00000085365 801 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 Gm17415-201ENSMUST00000096427 789 ntBASIC15.19■□□□□ 0.02
Col18a1P39061 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Col18a1P39061 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC15.19■□□□□ 0.02
Col18a1P39061 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC15.19■□□□□ 0.02
Col18a1P39061 Psme2-201ENSMUST00000111378 795 ntTSL 5 BASIC15.19■□□□□ 0.02
Col18a1P39061 Gm14320-201ENSMUST00000137275 1023 ntTSL 3 BASIC15.19■□□□□ 0.02
Col18a1P39061 Has2os-202ENSMUST00000163314 633 ntTSL 3 BASIC15.19■□□□□ 0.02
Col18a1P39061 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Myo1h-207ENSMUST00000196676 1256 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Itgax-203ENSMUST00000205460 1215 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 1700018G05Rik-201ENSMUST00000211116 386 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col18a1P39061 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm5472-201ENSMUST00000178604 1678 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Syt14-201ENSMUST00000016344 1904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Col18a1P39061 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Srd5a3-203ENSMUST00000113507 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm42858-201ENSMUST00000202512 1704 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm9-201ENSMUST00000101636 817 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm5860-201ENSMUST00000137810 1028 ntTSL 2 BASIC15.18■□□□□ 0.02
Col18a1P39061 Tcl1-203ENSMUST00000175652 535 ntTSL 2 BASIC15.18■□□□□ 0.02
Col18a1P39061 Cpsf4l-201ENSMUST00000018871 1235 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm8828-201ENSMUST00000196786 1290 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm18391-201ENSMUST00000217189 658 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm7242-201ENSMUST00000221134 705 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Fam186a-201ENSMUST00000062631 759 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm8730-201ENSMUST00000076373 954 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Gm22341-201ENSMUST00000083775 129 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col18a1P39061 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC15.18■□□□□ 0.02
Col18a1P39061 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Spef2-203ENSMUST00000159368 1422 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col18a1P39061 Etv1-204ENSMUST00000160701 1578 ntTSL 5 BASIC15.17■□□□□ 0.02
Col18a1P39061 Mir1190-201ENSMUST00000116925 96 ntBASIC15.17■□□□□ 0.02
Col18a1P39061 Rab11a-204ENSMUST00000167569 726 ntTSL 3 BASIC15.17■□□□□ 0.02
Col18a1P39061 2310009A05Rik-201ENSMUST00000184126 496 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms