Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Gm12164-201ENSMUST00000121695 551 ntBASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 9530097N15Rik-201ENSMUST00000197819 1068 ntBASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Gm17812-201ENSMUST00000204935 318 ntBASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Gm5455-201ENSMUST00000058710 715 ntBASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Gm6189-201ENSMUST00000164487 2082 ntBASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Prpf40aQ9R1C7 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm5847-201ENSMUST00000178959 1595 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm22133-201ENSMUST00000102082 109 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm5419-201ENSMUST00000119301 527 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm27627-201ENSMUST00000183644 150 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm45224-201ENSMUST00000208203 414 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm8913-201ENSMUST00000209491 641 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 AC159205.5-202ENSMUST00000224849 386 ntBASIC13□□□□□ -0.33
Prpf40aQ9R1C7 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Prpf40aQ9R1C7 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm14542-201ENSMUST00000118460 1248 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm15808-201ENSMUST00000119046 604 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm29615-201ENSMUST00000185371 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm28224-201ENSMUST00000186078 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm29001-201ENSMUST00000186177 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm28292-201ENSMUST00000186593 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm28101-201ENSMUST00000187608 697 ntBASIC12.99□□□□□ -0.33
Prpf40aQ9R1C7 Gm29076-201ENSMUST00000187689 697 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms