Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Mir7677-201ENSMUST00000184226 67 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm270-201ENSMUST00000223010 976 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm26448-201ENSMUST00000082446 203 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Ddx56Q9D0R4 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm43438-201ENSMUST00000198133 379 ntBASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Ddx56Q9D0R4 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Mir877-201ENSMUST00000104738 85 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm15711-201ENSMUST00000118889 535 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm12380-201ENSMUST00000119012 544 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm38117-201ENSMUST00000194653 939 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm7003-201ENSMUST00000195089 312 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Gm6450-201ENSMUST00000200896 574 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 AC167022.1-201ENSMUST00000218647 1458 ntBASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ddx56Q9D0R4 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms