Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Trim60Q8VI40 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.15□□□□□ -0.46
Trim60Q8VI40 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.15□□□□□ -0.46
Trim60Q8VI40 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.15□□□□□ -0.46
Trim60Q8VI40 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm15370-201ENSMUST00000117158 253 ntBASIC12.15□□□□□ -0.46
Trim60Q8VI40 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Gm2553-201ENSMUST00000215986 605 ntBASIC12.15□□□□□ -0.46
Trim60Q8VI40 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Trim60Q8VI40 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim60Q8VI40 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim60Q8VI40 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Trim60Q8VI40 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Trim60Q8VI40 Gm7841-201ENSMUST00000122108 1629 ntBASIC12.15□□□□□ -0.47
Trim60Q8VI40 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Trim60Q8VI40 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm44755-201ENSMUST00000207830 2102 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 AC123857.2-201ENSMUST00000225756 1582 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm11660-201ENSMUST00000120955 412 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm31256-201ENSMUST00000194705 506 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm4607-201ENSMUST00000206649 577 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.14□□□□□ -0.47
Trim60Q8VI40 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms