Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Col9a1Q05722 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm13456-201ENSMUST00000118928 1365 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 4930456G14Rik-201ENSMUST00000193054 1330 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm45172-201ENSMUST00000206054 1301 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Mir598-201ENSMUST00000102094 79 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm15617-201ENSMUST00000118973 771 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm13981-201ENSMUST00000122360 447 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm43191-201ENSMUST00000140672 704 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm22730-201ENSMUST00000158085 171 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC11.93□□□□□ -0.5
Col9a1Q05722 1700025F22Rik-203ENSMUST00000181284 562 ntTSL 3 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm7765-201ENSMUST00000182585 974 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm5268-201ENSMUST00000189212 940 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm37700-201ENSMUST00000192617 965 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm44422-201ENSMUST00000204142 1025 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm8952-201ENSMUST00000206828 1102 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
Col9a1Q05722 AC122305.2-201ENSMUST00000215148 834 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 AC142113.2-201ENSMUST00000217425 748 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 AC153516.1-201ENSMUST00000217955 779 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm6841-201ENSMUST00000220602 598 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm4811-201ENSMUST00000220879 1220 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 9530050K03Rik-201ENSMUST00000221663 1299 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Krtap6-3-201ENSMUST00000079151 444 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Bcl2-202ENSMUST00000189999 2841 ntBASIC11.93□□□□□ -0.5
Col9a1Q05722 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col9a1Q05722 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col9a1Q05722 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Olfr1472-202ENSMUST00000096201 1377 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm12697-201ENSMUST00000118008 667 ntBASIC11.92□□□□□ -0.5
Col9a1Q05722 Arl6-203ENSMUST00000118438 875 ntTSL 3 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Rps18-ps1-201ENSMUST00000120838 459 ntBASIC11.92□□□□□ -0.5
Col9a1Q05722 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm15819-201ENSMUST00000153089 481 ntTSL 2 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm4187-201ENSMUST00000172551 924 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm4133-201ENSMUST00000172989 924 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm3453-202ENSMUST00000178308 618 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm3127-203ENSMUST00000178386 618 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm2888-202ENSMUST00000178577 618 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm3685-202ENSMUST00000179199 618 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm34379-201ENSMUST00000195036 290 ntBASIC11.92□□□□□ -0.5
Col9a1Q05722 Gm37134-201ENSMUST00000195810 628 ntTSL 3 BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms