Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Gm27177-202ENSMUST00000183514 2703 ntBASIC17.82■□□□□ 0.44
Cux1P53564 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Cux1P53564 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cux1P53564 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC17.82■□□□□ 0.44
Cux1P53564 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Cux1P53564 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC17.82■□□□□ 0.44
Cux1P53564 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC17.82■□□□□ 0.44
Cux1P53564 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC17.82■□□□□ 0.44
Cux1P53564 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
Cux1P53564 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC17.82■□□□□ 0.44
Cux1P53564 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cux1P53564 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Cux1P53564 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC17.81■□□□□ 0.44
Cux1P53564 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
Cux1P53564 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Cux1P53564 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Gm8302-201ENSMUST00000119217 852 ntBASIC17.81■□□□□ 0.44
Cux1P53564 Gm12712-201ENSMUST00000120676 801 ntBASIC17.81■□□□□ 0.44
Cux1P53564 Gm14165-201ENSMUST00000121456 952 ntBASIC17.81■□□□□ 0.44
Cux1P53564 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Adora3-202ENSMUST00000164730 1219 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC17.81■□□□□ 0.44
Cux1P53564 Olfr525-201ENSMUST00000078103 1050 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Cux1P53564 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Cux1P53564 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Gm9915-201ENSMUST00000066196 1383 ntBASIC17.81■□□□□ 0.44
Cux1P53564 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
Cux1P53564 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Cux1P53564 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Nudt13-207ENSMUST00000224311 1574 ntBASIC17.81■□□□□ 0.44
Cux1P53564 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cux1P53564 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Gm18210-201ENSMUST00000209001 1524 ntBASIC17.8■□□□□ 0.44
Cux1P53564 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC17.8■□□□□ 0.44
Cux1P53564 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Cux1P53564 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC17.8■□□□□ 0.44
Cux1P53564 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC17.8■□□□□ 0.44
Cux1P53564 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Cux1P53564 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Cux1P53564 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Cux1P53564 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Gm5267-201ENSMUST00000191574 1045 ntBASIC17.8■□□□□ 0.44
Cux1P53564 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC17.8■□□□□ 0.44
Cux1P53564 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
Cux1P53564 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Gm14005-210ENSMUST00000225087 1413 ntBASIC17.8■□□□□ 0.44
Cux1P53564 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cux1P53564 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Cux1P53564 Gm5740-201ENSMUST00000211003 1857 ntBASIC17.79■□□□□ 0.44
Cux1P53564 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Cux1P53564 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Cux1P53564 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC17.79■□□□□ 0.44
Cux1P53564 Gm11957-201ENSMUST00000118304 779 ntBASIC17.79■□□□□ 0.44
Cux1P53564 Gm12906-201ENSMUST00000154610 441 ntBASIC17.79■□□□□ 0.44
Cux1P53564 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms