Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 AC129336.1-201ENSMUST00000220224 2277 ntBASIC13.66□□□□□ -0.22
Traf1P39428 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Traf1P39428 Gm13910-201ENSMUST00000121752 1428 ntBASIC13.66□□□□□ -0.22
Traf1P39428 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Traf1P39428 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Gm17391-201ENSMUST00000171036 126 ntBASIC13.66□□□□□ -0.22
Traf1P39428 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.66□□□□□ -0.22
Traf1P39428 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.66□□□□□ -0.22
Traf1P39428 Gm5852-201ENSMUST00000194119 1021 ntBASIC13.66□□□□□ -0.22
Traf1P39428 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC13.66□□□□□ -0.22
Traf1P39428 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Traf1P39428 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
Traf1P39428 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC13.66□□□□□ -0.22
Traf1P39428 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Traf1P39428 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
Traf1P39428 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Traf1P39428 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Traf1P39428 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Gm15595-201ENSMUST00000120840 961 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC13.65□□□□□ -0.22
Traf1P39428 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Gm22144-201ENSMUST00000157402 102 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC13.65□□□□□ -0.22
Traf1P39428 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC13.65□□□□□ -0.22
Traf1P39428 Gm6450-201ENSMUST00000200896 574 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Gm5051-201ENSMUST00000204085 485 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Gm45398-201ENSMUST00000210561 165 ntBASIC13.65□□□□□ -0.22
Traf1P39428 AC141438.2-201ENSMUST00000215068 271 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 AC159103.1-201ENSMUST00000228325 429 ntBASIC13.65□□□□□ -0.22
Traf1P39428 AC135114.1-201ENSMUST00000228682 270 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Traf1P39428 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Traf1P39428 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Gm29100-201ENSMUST00000187564 4410 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Traf1P39428 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Gm9796-201ENSMUST00000062249 2250 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 AC154517.2-201ENSMUST00000220829 2458 ntBASIC13.65□□□□□ -0.22
Traf1P39428 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Traf1P39428 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.23
Traf1P39428 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 AC130671.2-201ENSMUST00000227224 1621 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC13.64□□□□□ -0.23
Traf1P39428 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Traf1P39428 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 93 ms