Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC13.65□□□□□ -0.22
Col1a1P11087 Gm44953-201ENSMUST00000208745 1286 ntBASIC13.65□□□□□ -0.22
Col1a1P11087 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.65□□□□□ -0.22
Col1a1P11087 CT030652.1-201ENSMUST00000227377 1235 ntBASIC13.65□□□□□ -0.22
Col1a1P11087 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Gm6831-202ENSMUST00000213025 1673 ntBASIC13.65□□□□□ -0.22
Col1a1P11087 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
Col1a1P11087 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Col1a1P11087 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Col1a1P11087 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC13.64□□□□□ -0.23
Col1a1P11087 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC13.64□□□□□ -0.23
Col1a1P11087 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC13.64□□□□□ -0.23
Col1a1P11087 Gm29067-201ENSMUST00000190821 470 ntBASIC13.64□□□□□ -0.23
Col1a1P11087 Gm43969-201ENSMUST00000204833 535 ntBASIC13.64□□□□□ -0.23
Col1a1P11087 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 AC162932.1-201ENSMUST00000219209 872 ntBASIC13.64□□□□□ -0.23
Col1a1P11087 Gm18065-201ENSMUST00000221395 526 ntBASIC13.64□□□□□ -0.23
Col1a1P11087 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Smok4a-201ENSMUST00000074512 1455 ntBASIC13.64□□□□□ -0.23
Col1a1P11087 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC13.64□□□□□ -0.23
Col1a1P11087 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col1a1P11087 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Col1a1P11087 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
Col1a1P11087 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm6158-201ENSMUST00000109467 904 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm14165-201ENSMUST00000121456 952 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm9487-201ENSMUST00000216600 472 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Gm19692-201ENSMUST00000203856 2084 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 AC165351.1-201ENSMUST00000219078 2020 ntBASIC13.63□□□□□ -0.23
Col1a1P11087 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col1a1P11087 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col1a1P11087 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC13.62□□□□□ -0.23
Col1a1P11087 Gm44106-201ENSMUST00000203153 1599 ntBASIC13.62□□□□□ -0.23
Col1a1P11087 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col1a1P11087 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col1a1P11087 Gm14071-201ENSMUST00000117817 509 ntBASIC13.62□□□□□ -0.23
Col1a1P11087 Gm13039-201ENSMUST00000118638 794 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms