Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC11.55□□□□□ -0.56
Chd3B1AR17 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Chd3B1AR17 CT485606.1-201ENSMUST00000213187 878 ntBASIC11.55□□□□□ -0.56
Chd3B1AR17 CT485607.1-201ENSMUST00000216100 85 ntBASIC11.55□□□□□ -0.56
Chd3B1AR17 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Chd3B1AR17 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm11783-201ENSMUST00000119549 885 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm7150-201ENSMUST00000122032 981 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm28937-201ENSMUST00000185413 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm29400-201ENSMUST00000187208 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm28662-201ENSMUST00000188446 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm28251-201ENSMUST00000188835 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm37318-201ENSMUST00000194325 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm38017-201ENSMUST00000194768 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm37287-201ENSMUST00000195449 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm37793-201ENSMUST00000195548 695 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm5996-201ENSMUST00000211110 718 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Gm10752-201ENSMUST00000218348 729 ntBASIC11.54□□□□□ -0.56
Chd3B1AR17 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Chd3B1AR17 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Chd3B1AR17 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm8737-201ENSMUST00000122208 642 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC11.53□□□□□ -0.56
Chd3B1AR17 Mir1956-201ENSMUST00000157748 65 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm23771-201ENSMUST00000178702 110 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC11.53□□□□□ -0.56
Chd3B1AR17 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Chd3B1AR17 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm15615-201ENSMUST00000118876 198 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm12029-201ENSMUST00000120073 832 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm21778-201ENSMUST00000178779 471 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm37981-201ENSMUST00000194280 535 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm38314-201ENSMUST00000195709 625 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 Gm45219-201ENSMUST00000205602 465 ntBASIC11.53□□□□□ -0.56
Chd3B1AR17 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Chd3B1AR17 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Chd3B1AR17 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Chd3B1AR17 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Chd3B1AR17 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Chd3B1AR17 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Chd3B1AR17 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Chd3B1AR17 Gm4900-201ENSMUST00000222046 1628 ntBASIC11.52□□□□□ -0.56
Chd3B1AR17 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 AC141438.2-201ENSMUST00000215068 271 ntBASIC11.52□□□□□ -0.57
Chd3B1AR17 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 AC135114.1-201ENSMUST00000228682 270 ntBASIC11.52□□□□□ -0.57
Chd3B1AR17 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms