Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Gm15546-201ENSMUST00000122095 826 ntBASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn3Q8BHH8 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn3Q8BHH8 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn3Q8BHH8 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.18■□□□□ 0.66
Clrn3Q8BHH8 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 Gm15820-201ENSMUST00000201566 728 ntBASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Clrn3Q8BHH8 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn3Q8BHH8 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clrn3Q8BHH8 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.15■□□□□ 0.66
Clrn3Q8BHH8 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.15■□□□□ 0.66
Clrn3Q8BHH8 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clrn3Q8BHH8 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
Clrn3Q8BHH8 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Clrn3Q8BHH8 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clrn3Q8BHH8 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Gm40881-201ENSMUST00000223397 166 ntBASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clrn3Q8BHH8 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Clrn3Q8BHH8 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Clrn3Q8BHH8 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Clrn3Q8BHH8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Clrn3Q8BHH8 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.09■□□□□ 0.65
Clrn3Q8BHH8 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms