Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Iqck-206ENSMUST00000208658 2891 ntBASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scaf4Q6PFF0 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scaf4Q6PFF0 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scaf4Q6PFF0 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.29■□□□□ 0.84
Scaf4Q6PFF0 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Scaf4Q6PFF0 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Scaf4Q6PFF0 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf4Q6PFF0 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf4Q6PFF0 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Scaf4Q6PFF0 Gm27502-201ENSMUST00000183495 199 ntBASIC20.28■□□□□ 0.84
Scaf4Q6PFF0 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf4Q6PFF0 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Scaf4Q6PFF0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Scaf4Q6PFF0 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Scaf4Q6PFF0 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Scaf4Q6PFF0 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Scaf4Q6PFF0 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Gm14523-201ENSMUST00000117260 558 ntBASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scaf4Q6PFF0 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scaf4Q6PFF0 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scaf4Q6PFF0 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Scaf4Q6PFF0 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scaf4Q6PFF0 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Scaf4Q6PFF0 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Scaf4Q6PFF0 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Scaf4Q6PFF0 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Scaf4Q6PFF0 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.22■□□□□ 0.83
Scaf4Q6PFF0 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scaf4Q6PFF0 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scaf4Q6PFF0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scaf4Q6PFF0 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scaf4Q6PFF0 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms