Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col7a1Q63870 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.61■□□□□ 0.41
Col7a1Q63870 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col7a1Q63870 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.61■□□□□ 0.41
Col7a1Q63870 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col7a1Q63870 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col7a1Q63870 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.61■□□□□ 0.41
Col7a1Q63870 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Col7a1Q63870 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Col7a1Q63870 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
Col7a1Q63870 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Col7a1Q63870 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.6■□□□□ 0.41
Col7a1Q63870 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Col7a1Q63870 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Col7a1Q63870 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.59■□□□□ 0.41
Col7a1Q63870 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC17.59■□□□□ 0.41
Col7a1Q63870 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Col7a1Q63870 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Col7a1Q63870 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col7a1Q63870 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Col7a1Q63870 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Col7a1Q63870 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Col7a1Q63870 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.58■□□□□ 0.4
Col7a1Q63870 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col7a1Q63870 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col7a1Q63870 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col7a1Q63870 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col7a1Q63870 Mir5133-201ENSMUST00000174955 77 ntBASIC17.57■□□□□ 0.4
Col7a1Q63870 Gm13168-201ENSMUST00000121771 632 ntBASIC17.57■□□□□ 0.4
Col7a1Q63870 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.57■□□□□ 0.4
Col7a1Q63870 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.57■□□□□ 0.4
Col7a1Q63870 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col7a1Q63870 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col7a1Q63870 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col7a1Q63870 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col7a1Q63870 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col7a1Q63870 Gm13836-201ENSMUST00000121159 501 ntBASIC17.55■□□□□ 0.4
Col7a1Q63870 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.55■□□□□ 0.4
Col7a1Q63870 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col7a1Q63870 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col7a1Q63870 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.54■□□□□ 0.4
Col7a1Q63870 Gm20049-201ENSMUST00000219950 730 ntBASIC17.54■□□□□ 0.4
Col7a1Q63870 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC17.54■□□□□ 0.4
Col7a1Q63870 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.54■□□□□ 0.4
Col7a1Q63870 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.54■□□□□ 0.4
Col7a1Q63870 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Col7a1Q63870 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.54■□□□□ 0.4
Col7a1Q63870 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Gm37856-201ENSMUST00000191634 999 ntBASIC17.54■□□□□ 0.4
Col7a1Q63870 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col7a1Q63870 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col7a1Q63870 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.53■□□□□ 0.4
Col7a1Q63870 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col7a1Q63870 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.53■□□□□ 0.4
Col7a1Q63870 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col7a1Q63870 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.53■□□□□ 0.4
Col7a1Q63870 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.52■□□□□ 0.4
Col7a1Q63870 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.52■□□□□ 0.4
Col7a1Q63870 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Col7a1Q63870 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col7a1Q63870 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Col7a1Q63870 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Col7a1Q63870 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col7a1Q63870 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col7a1Q63870 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col7a1Q63870 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col7a1Q63870 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.51■□□□□ 0.39
Col7a1Q63870 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Col7a1Q63870 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col7a1Q63870 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Col7a1Q63870 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col7a1Q63870 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.5■□□□□ 0.39
Col7a1Q63870 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.5■□□□□ 0.39
Col7a1Q63870 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col7a1Q63870 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col7a1Q63870 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col7a1Q63870 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col7a1Q63870 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.5■□□□□ 0.39
Col7a1Q63870 Gm43530-201ENSMUST00000195920 274 ntBASIC17.5■□□□□ 0.39
Col7a1Q63870 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col7a1Q63870 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.5■□□□□ 0.39
Col7a1Q63870 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms