Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
Col27a1Q5QNQ9 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col27a1Q5QNQ9 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Col27a1Q5QNQ9 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.45■□□□□ 0.86
Col27a1Q5QNQ9 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col27a1Q5QNQ9 Gm10602-201ENSMUST00000098239 609 ntBASIC20.45■□□□□ 0.86
Col27a1Q5QNQ9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Col27a1Q5QNQ9 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col27a1Q5QNQ9 Gm42778-201ENSMUST00000199644 553 ntBASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Gm10653-202ENSMUST00000139570 835 ntBASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col27a1Q5QNQ9 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Col27a1Q5QNQ9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.42■□□□□ 0.86
Col27a1Q5QNQ9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col27a1Q5QNQ9 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Gm12441-201ENSMUST00000121806 588 ntBASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Gm11421-201ENSMUST00000122124 294 ntBASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Col27a1Q5QNQ9 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col27a1Q5QNQ9 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col27a1Q5QNQ9 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Col27a1Q5QNQ9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col27a1Q5QNQ9 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col27a1Q5QNQ9 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Col27a1Q5QNQ9 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 81.3 ms