Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ddb1Q3U1J4 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
Ddb1Q3U1J4 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ddb1Q3U1J4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ddb1Q3U1J4 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ddb1Q3U1J4 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
Ddb1Q3U1J4 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ddb1Q3U1J4 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC26.59■■□□□ 1.85
Ddb1Q3U1J4 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC26.58■■□□□ 1.85
Ddb1Q3U1J4 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ddb1Q3U1J4 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ddb1Q3U1J4 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ddb1Q3U1J4 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ddb1Q3U1J4 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ddb1Q3U1J4 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC26.57■■□□□ 1.84
Ddb1Q3U1J4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ddb1Q3U1J4 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC26.56■■□□□ 1.84
Ddb1Q3U1J4 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
Ddb1Q3U1J4 Gm12669-201ENSMUST00000122162 1009 ntBASIC26.56■■□□□ 1.84
Ddb1Q3U1J4 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Ddb1Q3U1J4 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ddb1Q3U1J4 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
Ddb1Q3U1J4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Ddb1Q3U1J4 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ddb1Q3U1J4 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Ddb1Q3U1J4 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Ddb1Q3U1J4 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ddb1Q3U1J4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ddb1Q3U1J4 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ddb1Q3U1J4 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddb1Q3U1J4 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC26.53■■□□□ 1.84
Ddb1Q3U1J4 Gm42778-201ENSMUST00000199644 553 ntBASIC26.53■■□□□ 1.84
Ddb1Q3U1J4 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC26.53■■□□□ 1.84
Ddb1Q3U1J4 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddb1Q3U1J4 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ddb1Q3U1J4 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ddb1Q3U1J4 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC26.51■■□□□ 1.83
Ddb1Q3U1J4 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Ddb1Q3U1J4 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Ddb1Q3U1J4 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
Ddb1Q3U1J4 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Ddb1Q3U1J4 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 AC165080.2-201ENSMUST00000217491 1530 ntBASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Gm10602-201ENSMUST00000098239 609 ntBASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ddb1Q3U1J4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Ddb1Q3U1J4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC26.49■■□□□ 1.83
Ddb1Q3U1J4 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Ddb1Q3U1J4 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
Ddb1Q3U1J4 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC26.48■■□□□ 1.83
Ddb1Q3U1J4 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Ddb1Q3U1J4 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ddb1Q3U1J4 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
Ddb1Q3U1J4 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ddb1Q3U1J4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ddb1Q3U1J4 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ddb1Q3U1J4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.83
Ddb1Q3U1J4 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
Ddb1Q3U1J4 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.83
Ddb1Q3U1J4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
Ddb1Q3U1J4 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC26.45■■□□□ 1.82
Ddb1Q3U1J4 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC26.45■■□□□ 1.82
Ddb1Q3U1J4 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
Ddb1Q3U1J4 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Ddb1Q3U1J4 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
Ddb1Q3U1J4 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC26.44■■□□□ 1.82
Ddb1Q3U1J4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Ddb1Q3U1J4 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Ddb1Q3U1J4 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Ddb1Q3U1J4 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Ddb1Q3U1J4 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
Ddb1Q3U1J4 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC26.43■■□□□ 1.82
Ddb1Q3U1J4 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Ddb1Q3U1J4 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ddb1Q3U1J4 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Ddb1Q3U1J4 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms