Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col28a1Q2UY11 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.87■□□□□ 0.77
Col28a1Q2UY11 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col28a1Q2UY11 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Col28a1Q2UY11 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col28a1Q2UY11 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col28a1Q2UY11 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col28a1Q2UY11 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col28a1Q2UY11 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col28a1Q2UY11 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 Iqck-206ENSMUST00000208658 2891 ntBASIC19.82■□□□□ 0.76
Col28a1Q2UY11 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col28a1Q2UY11 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col28a1Q2UY11 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col28a1Q2UY11 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Col28a1Q2UY11 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col28a1Q2UY11 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.81■□□□□ 0.76
Col28a1Q2UY11 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Col28a1Q2UY11 Gm13238-201ENSMUST00000117655 780 ntBASIC19.8■□□□□ 0.76
Col28a1Q2UY11 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Col28a1Q2UY11 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.8■□□□□ 0.76
Col28a1Q2UY11 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col28a1Q2UY11 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Col28a1Q2UY11 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
Col28a1Q2UY11 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Gm15820-201ENSMUST00000201566 728 ntBASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col28a1Q2UY11 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col28a1Q2UY11 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col28a1Q2UY11 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col28a1Q2UY11 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col28a1Q2UY11 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Golph3-202ENSMUST00000226517 2359 ntBASIC19.76■□□□□ 0.75
Col28a1Q2UY11 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms