Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
Hmgb1P63158 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC22.58■■□□□ 1.21
Hmgb1P63158 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC22.58■■□□□ 1.21
Hmgb1P63158 Gm43566-201ENSMUST00000196851 808 ntBASIC22.58■■□□□ 1.21
Hmgb1P63158 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Hmgb1P63158 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Gm5921-201ENSMUST00000075898 882 ntBASIC22.58■■□□□ 1.21
Hmgb1P63158 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Hmgb1P63158 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.58■■□□□ 1.21
Hmgb1P63158 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Hmgb1P63158 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Hmgb1P63158 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Hmgb1P63158 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Hmgb1P63158 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Hmgb1P63158 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Hmgb1P63158 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Hmgb1P63158 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Hmgb1P63158 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Hmgb1P63158 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Hmgb1P63158 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC22.56■■□□□ 1.2
Hmgb1P63158 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Hmgb1P63158 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Hmgb1P63158 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Hmgb1P63158 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Gm20634-201ENSMUST00000090779 2956 ntBASIC22.55■■□□□ 1.2
Hmgb1P63158 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Hmgb1P63158 Snhg20-203ENSMUST00000182811 2153 ntBASIC22.55■■□□□ 1.2
Hmgb1P63158 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.54■■□□□ 1.2
Hmgb1P63158 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Hmgb1P63158 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Hmgb1P63158 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Hmgb1P63158 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Hmgb1P63158 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Hmgb1P63158 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.52■■□□□ 1.2
Hmgb1P63158 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Hmgb1P63158 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Hmgb1P63158 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Hmgb1P63158 Gm13238-201ENSMUST00000117655 780 ntBASIC22.52■■□□□ 1.2
Hmgb1P63158 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC22.52■■□□□ 1.2
Hmgb1P63158 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Hmgb1P63158 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Hmgb1P63158 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Hmgb1P63158 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Hmgb1P63158 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Hmgb1P63158 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Hmgb1P63158 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Hmgb1P63158 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
Hmgb1P63158 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hmgb1P63158 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Hmgb1P63158 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hmgb1P63158 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hmgb1P63158 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hmgb1P63158 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Hmgb1P63158 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Hmgb1P63158 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.49■■□□□ 1.19
Hmgb1P63158 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.49■■□□□ 1.19
Hmgb1P63158 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC22.49■■□□□ 1.19
Hmgb1P63158 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Hmgb1P63158 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Hmgb1P63158 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hmgb1P63158 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hmgb1P63158 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Hmgb1P63158 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC22.48■■□□□ 1.19
Hmgb1P63158 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Hmgb1P63158 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
Hmgb1P63158 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Hmgb1P63158 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Hmgb1P63158 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC22.47■■□□□ 1.19
Hmgb1P63158 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms