Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Lmx1bO88609 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.58■□□□□ 0.56
Lmx1bO88609 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.58■□□□□ 0.56
Lmx1bO88609 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lmx1bO88609 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lmx1bO88609 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Lmx1bO88609 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lmx1bO88609 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lmx1bO88609 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lmx1bO88609 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lmx1bO88609 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.58■□□□□ 0.56
Lmx1bO88609 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Lmx1bO88609 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Lmx1bO88609 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Lmx1bO88609 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lmx1bO88609 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lmx1bO88609 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lmx1bO88609 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.56■□□□□ 0.56
Lmx1bO88609 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.56■□□□□ 0.56
Lmx1bO88609 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.56■□□□□ 0.56
Lmx1bO88609 Gm42418-201ENSMUST00000182010 1831 ntBASIC18.56■□□□□ 0.56
Lmx1bO88609 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Lmx1bO88609 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Lmx1bO88609 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lmx1bO88609 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Lmx1bO88609 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Lmx1bO88609 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.55■□□□□ 0.56
Lmx1bO88609 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
Lmx1bO88609 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.54■□□□□ 0.56
Lmx1bO88609 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Lmx1bO88609 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lmx1bO88609 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.54■□□□□ 0.56
Lmx1bO88609 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.53■□□□□ 0.56
Lmx1bO88609 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.53■□□□□ 0.56
Lmx1bO88609 Gm27454-201ENSMUST00000185090 204 ntBASIC18.53■□□□□ 0.56
Lmx1bO88609 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC18.53■□□□□ 0.56
Lmx1bO88609 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lmx1bO88609 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lmx1bO88609 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Lmx1bO88609 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.52■□□□□ 0.56
Lmx1bO88609 Gm9870-201ENSMUST00000063874 645 ntBASIC18.52■□□□□ 0.56
Lmx1bO88609 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Lmx1bO88609 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Lmx1bO88609 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.52■□□□□ 0.56
Lmx1bO88609 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lmx1bO88609 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Lmx1bO88609 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lmx1bO88609 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lmx1bO88609 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lmx1bO88609 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Lmx1bO88609 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lmx1bO88609 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.5■□□□□ 0.55
Lmx1bO88609 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Lmx1bO88609 Gm12821-201ENSMUST00000120022 600 ntBASIC18.5■□□□□ 0.55
Lmx1bO88609 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Gm45417-201ENSMUST00000209533 758 ntBASIC18.5■□□□□ 0.55
Lmx1bO88609 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.5■□□□□ 0.55
Lmx1bO88609 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC18.5■□□□□ 0.55
Lmx1bO88609 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lmx1bO88609 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.49■□□□□ 0.55
Lmx1bO88609 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lmx1bO88609 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lmx1bO88609 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
Lmx1bO88609 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Lmx1bO88609 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms