Protein–RNA interactions for Protein: O35544

Slc1a6, Excitatory amino acid transporter 4, mousemouse

Predictions only

Length 561 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc1a6O35544 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Slc1a6O35544 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Slc1a6O35544 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Slc1a6O35544 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Slc1a6O35544 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.26■□□□□ 0.83
Slc1a6O35544 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.26■□□□□ 0.83
Slc1a6O35544 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Slc1a6O35544 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Slc1a6O35544 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Slc1a6O35544 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Slc1a6O35544 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Slc1a6O35544 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Slc1a6O35544 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Slc1a6O35544 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Slc1a6O35544 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Slc1a6O35544 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Slc1a6O35544 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Slc1a6O35544 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Slc1a6O35544 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Slc1a6O35544 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Slc1a6O35544 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Slc1a6O35544 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Slc1a6O35544 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Slc1a6O35544 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Slc1a6O35544 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Slc1a6O35544 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Slc1a6O35544 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Slc1a6O35544 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.23■□□□□ 0.83
Slc1a6O35544 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Slc1a6O35544 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.23■□□□□ 0.83
Slc1a6O35544 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Slc1a6O35544 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.23■□□□□ 0.83
Slc1a6O35544 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Slc1a6O35544 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Slc1a6O35544 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Slc1a6O35544 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.22■□□□□ 0.83
Slc1a6O35544 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Slc1a6O35544 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Slc1a6O35544 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Slc1a6O35544 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Slc1a6O35544 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
Slc1a6O35544 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.21■□□□□ 0.83
Slc1a6O35544 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Slc1a6O35544 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.21■□□□□ 0.83
Slc1a6O35544 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Slc1a6O35544 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Gm14523-201ENSMUST00000117260 558 ntBASIC20.2■□□□□ 0.82
Slc1a6O35544 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Slc1a6O35544 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Slc1a6O35544 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Slc1a6O35544 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Slc1a6O35544 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Slc1a6O35544 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Slc1a6O35544 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Slc1a6O35544 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Slc1a6O35544 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Slc1a6O35544 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Slc1a6O35544 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Slc1a6O35544 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.19■□□□□ 0.82
Slc1a6O35544 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.19■□□□□ 0.82
Slc1a6O35544 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.19■□□□□ 0.82
Slc1a6O35544 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Slc1a6O35544 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.18■□□□□ 0.82
Slc1a6O35544 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.18■□□□□ 0.82
Slc1a6O35544 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Slc1a6O35544 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Slc1a6O35544 Gm27502-201ENSMUST00000183495 199 ntBASIC20.17■□□□□ 0.82
Slc1a6O35544 Golph3-202ENSMUST00000226517 2359 ntBASIC20.17■□□□□ 0.82
Slc1a6O35544 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Slc1a6O35544 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.17■□□□□ 0.82
Slc1a6O35544 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Slc1a6O35544 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Slc1a6O35544 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Slc1a6O35544 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Slc1a6O35544 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Slc1a6O35544 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Slc1a6O35544 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Slc1a6O35544 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 146.5 ms