Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col6a4A2AX52 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col6a4A2AX52 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col6a4A2AX52 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col6a4A2AX52 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col6a4A2AX52 Spcs1-204ENSMUST00000226782 949 ntBASIC17.38■□□□□ 0.37
Col6a4A2AX52 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Col6a4A2AX52 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.38■□□□□ 0.37
Col6a4A2AX52 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.38■□□□□ 0.37
Col6a4A2AX52 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.38■□□□□ 0.37
Col6a4A2AX52 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Col6a4A2AX52 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col6a4A2AX52 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col6a4A2AX52 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a4A2AX52 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.36■□□□□ 0.37
Col6a4A2AX52 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.36■□□□□ 0.37
Col6a4A2AX52 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC17.36■□□□□ 0.37
Col6a4A2AX52 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a4A2AX52 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a4A2AX52 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col6a4A2AX52 AV356131-201ENSMUST00000206201 750 ntBASIC17.36■□□□□ 0.37
Col6a4A2AX52 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col6a4A2AX52 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col6a4A2AX52 Gm40848-201ENSMUST00000221998 324 ntBASIC17.35■□□□□ 0.37
Col6a4A2AX52 Gm7143-201ENSMUST00000222811 859 ntBASIC17.35■□□□□ 0.37
Col6a4A2AX52 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC17.35■□□□□ 0.37
Col6a4A2AX52 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col6a4A2AX52 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Col6a4A2AX52 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.34■□□□□ 0.37
Col6a4A2AX52 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col6a4A2AX52 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col6a4A2AX52 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col6a4A2AX52 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col6a4A2AX52 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
Col6a4A2AX52 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.33■□□□□ 0.36
Col6a4A2AX52 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.33■□□□□ 0.36
Col6a4A2AX52 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col6a4A2AX52 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Smad6-203ENSMUST00000179458 273 ntBASIC17.31■□□□□ 0.36
Col6a4A2AX52 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Col6a4A2AX52 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.31■□□□□ 0.36
Col6a4A2AX52 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a4A2AX52 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.3■□□□□ 0.36
Col6a4A2AX52 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a4A2AX52 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a4A2AX52 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a4A2AX52 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a4A2AX52 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a4A2AX52 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a4A2AX52 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col6a4A2AX52 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a4A2AX52 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Col6a4A2AX52 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms