Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv20A0A0B4J1H5 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 AC167019.3-201ENSMUST00000228225 1266 ntBASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.43■□□□□ 0.54
Trbv20A0A0B4J1H5 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trbv20A0A0B4J1H5 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 AC158990.1-201ENSMUST00000221450 2016 ntBASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.41■□□□□ 0.54
Trbv20A0A0B4J1H5 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Gm11599-201ENSMUST00000118720 878 ntBASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Gm7432-201ENSMUST00000210343 879 ntBASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv20A0A0B4J1H5 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
Trbv20A0A0B4J1H5 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv20A0A0B4J1H5 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC18.39■□□□□ 0.53
Trbv20A0A0B4J1H5 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv20A0A0B4J1H5 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv20A0A0B4J1H5 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.38■□□□□ 0.53
Trbv20A0A0B4J1H5 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv20A0A0B4J1H5 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv20A0A0B4J1H5 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv20A0A0B4J1H5 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Trbv20A0A0B4J1H5 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms