Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trav6d-5A0A075B6B9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trav6d-5A0A075B6B9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trav6d-5A0A075B6B9 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-5A0A075B6B9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC16.6■□□□□ 0.25
Trav6d-5A0A075B6B9 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm43545-201ENSMUST00000196765 2779 ntBASIC16.59■□□□□ 0.25
Trav6d-5A0A075B6B9 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-5A0A075B6B9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-5A0A075B6B9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-5A0A075B6B9 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-5A0A075B6B9 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-5A0A075B6B9 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-5A0A075B6B9 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Gm6311-201ENSMUST00000073790 878 ntBASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.56■□□□□ 0.24
Trav6d-5A0A075B6B9 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 AC151971.4-201ENSMUST00000214717 704 ntBASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.55■□□□□ 0.24
Trav6d-5A0A075B6B9 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms