Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.8□□□□□ -0.36
Trim54Q9ERP3 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trim54Q9ERP3 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm11892-201ENSMUST00000117711 1202 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm9645-201ENSMUST00000197131 792 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm7600-201ENSMUST00000209657 785 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Map1b-203ENSMUST00000223725 2669 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm44152-201ENSMUST00000205007 1691 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trim54Q9ERP3 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm16071-201ENSMUST00000119589 793 ntBASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Mir7076-201ENSMUST00000183519 74 ntBASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm17826-201ENSMUST00000189720 798 ntBASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm44980-201ENSMUST00000205826 314 ntBASIC12.78□□□□□ -0.36
Trim54Q9ERP3 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trim54Q9ERP3 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim54Q9ERP3 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.77□□□□□ -0.36
Trim54Q9ERP3 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Trim54Q9ERP3 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trim54Q9ERP3 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms